Publications

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NMR structures of two designed proteins with high sequence identity but different fold and function.
He Y, Chen Y, Alexander P, Bryan PN, Orban J. 2008. NMR structures of two designed proteins with high sequence identity but different fold and function. Proceedings of the National Academy of Sciences of the United States of America 105(38): 14412-7. DOI: 10.1073/pnas.0805857105
Microarray analysis of toxicogenomic effects of ortho-phenylphenol in Staphylococcus aureus.
Jang HJ, Nde C, Toghrol F, Bentley WE. 2008. Microarray analysis of toxicogenomic effects of ortho-phenylphenol in Staphylococcus aureus. BMC genomics 9: 411. DOI: 10.1186/1471-2164-9-411
17alpha-Hydroxylase/17,20 lyase inhibitor VN/124-1 inhibits growth of androgen-independent prostate cancer cells via induction of the endoplasmic reticulum stress response.
Bruno RD, Gover TD, Burger AM, Brodie AM, Njar VC. 2008. 17alpha-Hydroxylase/17,20 lyase inhibitor VN/124-1 inhibits growth of androgen-independent prostate cancer cells via induction of the endoplasmic reticulum stress response. Molecular cancer therapeutics 7(9): 2828-36. DOI: 10.1158/1535-7163.MCT-08-0336
Studies of membrane topology of mitochondrial cholesterol hydroxylases CYPs 27A1 and 11A1.
Pikuleva IA, Mast N, Liao WL, Turko IV. 2008. Studies of membrane topology of mitochondrial cholesterol hydroxylases CYPs 27A1 and 11A1. Lipids 43(12): 1127-32. DOI: 10.1007/s11745-008-3234-x
Solution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS data.
Grishaev A, Ying J, Canny MD, Pardi A, Bax A. 2008. Solution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS data. Journal of biomolecular NMR 42(2): 99-109. DOI: 10.1007/s10858-008-9267-x
Thermoplasma acidophilum Cdc6 protein stimulates MCM helicase activity by regulating its ATPase activity.
Haugland GT, Sakakibara N, Pey AL, Rollor CR, Birkeland NK, Kelman Z. 2008. Thermoplasma acidophilum Cdc6 protein stimulates MCM helicase activity by regulating its ATPase activity. Nucleic acids research 36(17): 5602-9. DOI: 10.1093/nar/gkn548
Beyond silencing--engineering applications of RNA interference and antisense technology for altering cellular phenotype.
Hebert CG, Valdes JJ, Bentley WE. 2008. Beyond silencing--engineering applications of RNA interference and antisense technology for altering cellular phenotype. Current opinion in biotechnology 19(5): 500-5. DOI: 10.1016/j.copbio.2008.08.006
Androgen receptor inactivation contributes to antitumor efficacy of 17{alpha}-hydroxylase/17,20-lyase inhibitor 3beta-hydroxy-17-(1H-benzimidazole-1-yl)androsta-5,16-diene in prostate cancer.
Vasaitis T, Belosay A, Schayowitz A, Khandelwal A, Chopra P, Gediya LK, Guo Z, Fang HB, Njar VC, Brodie AM. 2008. Androgen receptor inactivation contributes to antitumor efficacy of 17{alpha}-hydroxylase/17,20-lyase inhibitor 3beta-hydroxy-17-(1H-benzimidazole-1-yl)androsta-5,16-diene in prostate cancer. Molecular cancer therapeutics 7(8): 2348-57. DOI: 10.1158/1535-7163.MCT-08-0230
A comparative biochemical and structural analysis of the intracellular chorismate mutase (Rv0948c) from Mycobacterium tuberculosis H(37)R(v) and the secreted chorismate mutase (y2828) from Yersinia pestis.
Kim SK, Reddy SK, Nelson BC, Robinson H, Reddy PT, Ladner JE. 2008. A comparative biochemical and structural analysis of the intracellular chorismate mutase (Rv0948c) from Mycobacterium tuberculosis H(37)R(v) and the secreted chorismate mutase (y2828) from Yersinia pestis. The FEBS journal 275(19): 4824-35. DOI: 10.1111/j.1742-4658.2008.06621.x
Comparison of some representative density functional theory and wave function theory methods for the studies of amino acids.
Yu W, Liang L, Lin Z, Ling S, Haranczyk M, Gutowski M. 2009. Comparison of some representative density functional theory and wave function theory methods for the studies of amino acids. Journal of computational chemistry 30(4): 589-600. DOI: 10.1002/jcc.21091
Glycosidic linkage conformation of methyl-alpha-mannopyranoside.
Coskuner O, Bergeron DE, Rincon L, Hudgens JW, Gonzalez CA. 2008. Glycosidic linkage conformation of methyl-alpha-mannopyranoside. The Journal of chemical physics 129(4): 045102. DOI: 10.1063/1.2958916
Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules.
Hodis E, Prilusky J, Martz E, Silman I, Moult J, Sussman JL. 2008. Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules. Genome biology 9(8): R121. DOI: 10.1186/gb-2008-9-8-r121
Matrix development in self-assembly of articular cartilage.
Ofek G, Revell CM, Hu JC, Allison DD, Grande-Allen KJ, Athanasiou KA. 2008. Matrix development in self-assembly of articular cartilage. PloS one 3(7): e2795. DOI: 10.1371/journal.pone.0002795
Oxygen microscopy by two-photon-excited phosphorescence.
Finikova OS, Lebedev AY, Aprelev A, Troxler T, Gao F, Garnacho C, Muro S, Hochstrasser RM, Vinogradov SA. 2008. Oxygen microscopy by two-photon-excited phosphorescence. Chemphyschem : a European journal of chemical physics and physical chemistry 9(12): 1673-9. DOI: 10.1002/cphc.200800296
Cryo-electron microscopy reveals a novel DNA-binding site on the MCM helicase.
Costa A, van Duinen G, Medagli B, Chong J, Sakakibara N, Kelman Z, Nair SK, Patwardhan A, Onesti S. 2008. Cryo-electron microscopy reveals a novel DNA-binding site on the MCM helicase. The EMBO journal 27(16): 2250-8. DOI: 10.1038/emboj.2008.135