Publications

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Lattice model simulation of interchain protein interactions and the folding dynamics and dimerization of the GCN4 Leucine zipper.
Liu Y, Chapagain PP, Parra JL, Gerstman BS. 2008. Lattice model simulation of interchain protein interactions and the folding dynamics and dimerization of the GCN4 Leucine zipper. The Journal of chemical physics 128(4): 045106. DOI: 10.1063/1.2831513
Divergence of function in the hot dog fold enzyme superfamily: the bacterial thioesterase YciA.
Zhuang Z, Song F, Zhao H, Li L, Cao J, Eisenstein E, Herzberg O, Dunaway-Mariano D. 2008. Divergence of function in the hot dog fold enzyme superfamily: the bacterial thioesterase YciA. Biochemistry 47(9): 2789-96. DOI: 10.1021/bi702334h
Chitosan biotinylation and electrodeposition for selective protein assembly.
Shi XW, Liu Y, Lewandowski AT, Wu LQ, Wu HC, Ghodssi R, Rubloff GW, Bentley WE, Payne GF. 2008. Chitosan biotinylation and electrodeposition for selective protein assembly. Macromolecular bioscience 8(5): 451-7. DOI: 10.1002/mabi.200700220
Microarray analysis of toxicogenomic effects of triclosan on Staphylococcus aureus.
Jang HJ, Chang MW, Toghrol F, Bentley WE. 2008. Microarray analysis of toxicogenomic effects of triclosan on Staphylococcus aureus. Applied microbiology and biotechnology 78(4): 695-707. DOI: 10.1007/s00253-008-1349-x
Synergistic effect of a novel antiandrogen, VN/124-1, and signal transduction inhibitors in prostate cancer progression to hormone independence in vitro.
Schayowitz A, Sabnis G, Njar VC, Brodie AM. 2008. Synergistic effect of a novel antiandrogen, VN/124-1, and signal transduction inhibitors in prostate cancer progression to hormone independence in vitro. Molecular cancer therapeutics 7(1): 121-32. DOI: 10.1158/1535-7163.MCT-07-0581
Self-assembled monolayers of an oligo(ethylene oxide) disulfide and its corresponding thiol assembled from water: characterization and protein resistance.
Vanderah DJ, Walker ML, Rocco MA, Rubinson KA. 2008. Self-assembled monolayers of an oligo(ethylene oxide) disulfide and its corresponding thiol assembled from water: characterization and protein resistance. Langmuir : the ACS journal of surfaces and colloids 24(3): 826-9. DOI: 10.1021/la7028824
Coupling of DNA binding and helicase activity is mediated by a conserved loop in the MCM protein.
Sakakibara N, Kasiviswanathan R, Melamud E, Han M, Schwarz FP, Kelman Z. 2008. Coupling of DNA binding and helicase activity is mediated by a conserved loop in the MCM protein. Nucleic acids research 36(4): 1309-20. DOI: 10.1093/nar/gkm1160
Comparative modeling in structural genomics.
Moult J. 2008. Comparative modeling in structural genomics. Structure (London, England : 1993) 16(1): 14-6. DOI: 10.1016/j.str.2007.12.001
RhoA activation and actin reorganization involved in endothelial CAM-mediated endocytosis of anti-PECAM carriers: critical role for tyrosine 686 in the cytoplasmic tail of PECAM-1.
Garnacho C, Shuvaev V, Thomas A, McKenna L, Sun J, Koval M, Albelda S, Muzykantov V, Muro S. 2008. RhoA activation and actin reorganization involved in endothelial CAM-mediated endocytosis of anti-PECAM carriers: critical role for tyrosine 686 in the cytoplasmic tail of PECAM-1. Blood 111(6): 3024-33. DOI: 10.1182/blood-2007-06-098657
Improved synthesis of histone deacetylase inhibitors (HDIs) (MS-275 and CI-994) and inhibitory effects of HDIs alone or in combination with RAMBAs or retinoids on growth of human LNCaP prostate cancer cells and tumor xenografts.
Gediya LK, Belosay A, Khandelwal A, Purushottamachar P, Njar VC. 2008. Improved synthesis of histone deacetylase inhibitors (HDIs) (MS-275 and CI-994) and inhibitory effects of HDIs alone or in combination with RAMBAs or retinoids on growth of human LNCaP prostate cancer cells and tumor xenografts. Bioorganic & medicinal chemistry 16(6): 3352-60. DOI: 10.1016/j.bmc.2007.12.007
Inhibition of protein-protein interactions with low molecular weight compounds.
Matthews MM, Weber DJ, Shapiro PS, Coop A, Mackerell AD. 2008. Inhibition of protein-protein interactions with low molecular weight compounds. Current trends in medicinal chemistry 5: 21-32.
The Design and Synthesis of Highly Branched and Spherically Symmetric Fluorinated Macrocyclic Chelators.
Jiang ZX, Yu YB. 2008. The Design and Synthesis of Highly Branched and Spherically Symmetric Fluorinated Macrocyclic Chelators. Synthesis 2008(2): 215-220.
Self-assembly of virus-structured high surface area nanomaterials and their application as battery electrodes.
Royston E, Ghosh A, Kofinas P, Harris MT, Culver JN. 2008. Self-assembly of virus-structured high surface area nanomaterials and their application as battery electrodes. Langmuir : the ACS journal of surfaces and colloids 24(3): 906-12.
Characterization of the essential activities of Saccharomyces cerevisiae Mtr4p, a 3'->5' helicase partner of the nuclear exosome.
Bernstein J, Patterson DN, Wilson GM, Toth EA. 2008. Characterization of the essential activities of Saccharomyces cerevisiae Mtr4p, a 3'->5' helicase partner of the nuclear exosome. The Journal of biological chemistry 283(8): 4930-42.
Tobacco mosaic virus replicase-auxin/indole acetic acid protein interactions: reprogramming the auxin response pathway to enhance virus infection.
Padmanabhan MS, Kramer SR, Wang X, Culver JN. 2008. Tobacco mosaic virus replicase-auxin/indole acetic acid protein interactions: reprogramming the auxin response pathway to enhance virus infection. Journal of virology 82(5): 2477-85.