Publications

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Novel application of cytodetachment technology to the analysis of dental implant surfaces.
Bhatavadekar NB, Hu J, Keys K, Ofek G, Athanasiou KA. 2022. Novel application of cytodetachment technology to the analysis of dental implant surfaces. The International journal of oral & maxillofacial implants 26(5): 985-90.
Community-wide assessment of protein-interface modeling suggests improvements to design methodology.
Fleishman SJ, Whitehead TA, Strauch EM, Corn JE, Qin S, Zhou HX, Mitchell JC, Demerdash ON, Takeda-Shitaka M, Terashi G, et al. 2011. Community-wide assessment of protein-interface modeling suggests improvements to design methodology. Journal of molecular biology 414(2): 289-302. DOI: 10.1016/j.jmb.2011.09.031
Antibody mechanics on a membrane-bound HIV segment essential for GP41-targeted viral neutralization.
Kim M, Sun ZY, Rand KD, Shi X, Song L, Cheng Y, Fahmy AF, Majumdar S, Ofek G, Yang Y, et al. 2011. Antibody mechanics on a membrane-bound HIV segment essential for GP41-targeted viral neutralization. Nature structural & molecular biology 18(11): 1235-43. DOI: 10.1038/nsmb.2154
Critical assessment of methods of protein structure prediction (CASP)--round IX.
Moult J, Fidelis K, Kryshtafovych A, Tramontano A. 2011. Critical assessment of methods of protein structure prediction (CASP)--round IX. Proteins 79 Suppl 10: 1-5. DOI: 10.1002/prot.23200
CASP9 results compared to those of previous CASP experiments.
Kryshtafovych A, Fidelis K, Moult J. 2011. CASP9 results compared to those of previous CASP experiments. Proteins 79 Suppl 10: 196-207. DOI: 10.1002/prot.23182
Structural characterization of the viral and cRNA panhandle motifs from the infectious salmon anemia virus.
Brinson RG, Szakal AL, Marino JP. 2011. Structural characterization of the viral and cRNA panhandle motifs from the infectious salmon anemia virus. Journal of virology 85(24): 13398-408. DOI: 10.1128/JVI.06250-11
Viscoelastic properties and nanoscale structures of composite oligopeptide-polysaccharide hydrogels.
Hyland LL, Taraban MB, Feng Y, Hammouda B, Yu YB. 2012. Viscoelastic properties and nanoscale structures of composite oligopeptide-polysaccharide hydrogels. Biopolymers 97(3): 177-88. DOI: 10.1002/bip.21722
N-Acetylfarnesylcysteine is a novel class of peroxisome proliferator-activated receptor γ ligand with partial and full agonist activity in vitro and in vivo.
Bhalla K, Hwang BJ, Choi JH, Dewi R, Ou L, Mclenithan J, Twaddel W, Pozharski E, Stock J, Girnun GD. 2011. N-Acetylfarnesylcysteine is a novel class of peroxisome proliferator-activated receptor γ ligand with partial and full agonist activity in vitro and in vivo. The Journal of biological chemistry 286(48): 41626-41635. DOI: 10.1074/jbc.M111.257915
LsrR quorum sensing "switch" is revealed by a bottom-up approach.
Hooshangi S, Bentley WE. 2011. LsrR quorum sensing "switch" is revealed by a bottom-up approach. PLoS computational biology 7(9): e1002172. DOI: 10.1371/journal.pcbi.1002172
Targeting zymogen activation to control the matriptase-prostasin proteolytic cascade.
Xu Z, Chen YW, Battu A, Wilder P, Weber D, Yu W, Mackerell AD, Chen LM, Chai KX, Johnson MD, et al. 2011. Targeting zymogen activation to control the matriptase-prostasin proteolytic cascade. Journal of medicinal chemistry 54(21): 7567-78. DOI: 10.1021/jm200920s
S100A1 (S100 calcium binding protein A1).
Cannon BR, Zimmer DB, Weber DJ. 2011. S100A1 (S100 calcium binding protein A1). Atlas of genetics and cytogenetics in oncology and haematology 15(10): 873-876.
Effect of flow on endothelial endocytosis of nanocarriers targeted to ICAM-1.
Bhowmick T, Berk E, Cui X, Muzykantov VR, Muro S. 2012. Effect of flow on endothelial endocytosis of nanocarriers targeted to ICAM-1. Journal of controlled release : official journal of the Controlled Release Society 157(3): 485-92. DOI: 10.1016/j.jconrel.2011.09.067
Measurement of (1)H-(15)N and (1)H-(13)C residual dipolar couplings in nucleic acids from TROSY intensities.
Ying J, Wang J, Grishaev A, Yu P, Wang YX, Bax A. 2011. Measurement of (1)H-(15)N and (1)H-(13)C residual dipolar couplings in nucleic acids from TROSY intensities. Journal of biomolecular NMR 51(1-2): 89-103. DOI: 10.1007/s10858-011-9544-y
Protein stability and in vivo concentration of missense mutations in phenylalanine hydroxylase.
Shi Z, Sellers J, Moult J. 2012. Protein stability and in vivo concentration of missense mutations in phenylalanine hydroxylase. Proteins 80(1): 61-70. DOI: 10.1002/prot.23159
Accelerating protein docking in ZDOCK using an advanced 3D convolution library.
Pierce BG, Hourai Y, Weng Z. 2011. Accelerating protein docking in ZDOCK using an advanced 3D convolution library. PloS one 6(9): e24657. DOI: 10.1371/journal.pone.0024657