Publications

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The Biomolecular Crystallization Database Version 4: expanded content and new features.
Tung M, Gallagher DT. 2009. The Biomolecular Crystallization Database Version 4: expanded content and new features. Acta crystallographica. Section D, Biological crystallography 65(Pt 1): 18-23. DOI: 10.1107/S0907444908035440
Structure of the F-spondin domain of mindin, an integrin ligand and pattern recognition molecule.
Li Y, Cao C, Jia W, Yu L, Mo M, Wang Q, Huang Y, Lim JM, Ishihara M, Wells L, et al. 2009. Structure of the F-spondin domain of mindin, an integrin ligand and pattern recognition molecule. The EMBO journal 28(3): 286-97. DOI: 10.1038/emboj.2008.288
Discovery of indoline-based, natural-product-like compounds as probes of focal adhesion kinase signaling pathways.
Poondra RR, Kumar NN, Bijian K, Prakesch M, Campagna-Slater V, Reayi A, Reddy PT, Choudhry A, Barnes ML, Leek DM, et al. 2009. Discovery of indoline-based, natural-product-like compounds as probes of focal adhesion kinase signaling pathways. Journal of combinatorial chemistry 11(2): 303-9. DOI: 10.1021/cc8001525
Microbial nar-GFP cell sensors reveal oxygen limitations in highly agitated and aerated laboratory-scale fermentors.
Garcia JR, Cha HJ, Rao G, Marten MR, Bentley WE. 2009. Microbial nar-GFP cell sensors reveal oxygen limitations in highly agitated and aerated laboratory-scale fermentors. Microbial cell factories 8: 6. DOI: 10.1186/1475-2859-8-6
How is the archaeal MCM helicase assembled at the origin? Possible mechanisms.
Sakakibara N, Kelman LM, Kelman Z. 2009. How is the archaeal MCM helicase assembled at the origin? Possible mechanisms. Biochemical Society transactions 37(Pt 1): 7-11. DOI: 10.1042/BST0370007
Use of a bacteriophage lysin, PlyC, as an enzyme disinfectant against Streptococcus equi.
Hoopes JT, Stark CJ, Kim HA, Sussman DJ, Donovan DM, Nelson DC. 2009. Use of a bacteriophage lysin, PlyC, as an enzyme disinfectant against Streptococcus equi. Applied and environmental microbiology 75(5): 1388-94. DOI: 10.1128/AEM.02195-08
Structure and function of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member.
Narayanan B, Niu W, Joosten HJ, Li Z, Kuipers RK, Schaap PJ, Dunaway-Mariano D, Herzberg O. 2009. Structure and function of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member. Journal of molecular biology 386(2): 486-503. DOI: 10.1016/j.jmb.2008.12.037
Orthogonal enzymatic reactions for the assembly of proteins at electrode addresses.
Yang X, Shi XW, Liu Y, Bentley WE, Payne GF. 2009. Orthogonal enzymatic reactions for the assembly of proteins at electrode addresses. Langmuir : the ACS journal of surfaces and colloids 25(1): 338-44. DOI: 10.1021/la802618q
The Coffey Lecture: steroidogenic enzyme inhibitors and hormone dependent cancer.
Brodie A, Njar V, Macedo LF, Vasaitis TS, Sabnis G. 2022. The Coffey Lecture: steroidogenic enzyme inhibitors and hormone dependent cancer. Urologic oncology 27(1): 53-63. DOI: 10.1016/j.urolonc.2008.07.036
Cloning, Purification, and Partial Characterization of the Halobacterium sp. NRC-1 Minichromosome Maintenance (MCM) Helicase.
Sakakibara N, Han M, Rollor CR, Gilson RC, Busch C, Heo G, Kelman Z. 2008. Cloning, Purification, and Partial Characterization of the Halobacterium sp. NRC-1 Minichromosome Maintenance (MCM) Helicase. The open microbiology journal 2: 13-7. DOI: 10.2174/1874285800802010013
The trigger sequence in the GCN4 leucine zipper: alpha-helical propensity and multistate dynamics of folding and dimerization.
Chapagain PP, Liu Y, Gerstman BS. 2008. The trigger sequence in the GCN4 leucine zipper: alpha-helical propensity and multistate dynamics of folding and dimerization. The Journal of chemical physics 129(17): 175103. DOI: 10.1063/1.3006421
Investigating apoptosis: characterization and analysis of Trichoplusia ni-caspase-1 through overexpression and RNAi mediated silencing.
Hebert CG, Valdes JJ, Bentley WE. 2009. Investigating apoptosis: characterization and analysis of Trichoplusia ni-caspase-1 through overexpression and RNAi mediated silencing. Insect biochemistry and molecular biology 39(2): 113-24. DOI: 10.1016/j.ibmb.2008.10.009
The role of bias in crystallization conditions in automated microseeding.
St John FJ, Feng B, Pozharski E. 2008. The role of bias in crystallization conditions in automated microseeding. Acta crystallographica. Section D, Biological crystallography 64(Pt 12): 1222-7. DOI: 10.1107/S0907444908031302
Block copolymer nanotemplating of tobacco mosaic and tobacco necrosis viruses.
Cresce AV, Culver JN, Bentley WE, Kofinas P. 2009. Block copolymer nanotemplating of tobacco mosaic and tobacco necrosis viruses. Acta biomaterialia 5(3): 893-902. DOI: 10.1016/j.actbio.2008.10.013
Analysis of neutralization specificities in polyclonal sera derived from human immunodeficiency virus type 1-infected individuals.
Li Y, Svehla K, Louder MK, Wycuff D, Phogat S, Tang M, Migueles SA, Wu X, Phogat A, Shaw GM, et al. 2009. Analysis of neutralization specificities in polyclonal sera derived from human immunodeficiency virus type 1-infected individuals. Journal of virology 83(2): 1045-59. DOI: 10.1128/JVI.01992-08