Publications

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Inactivation of Escherichia coli L-aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-thiophenecarboxylic acid reveals "a tale of two mechanisms".
Liu D, Pozharski E, Lepore BW, Fu M, Silverman RB, Petsko GA, Ringe D. 2007. Inactivation of Escherichia coli L-aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-thiophenecarboxylic acid reveals "a tale of two mechanisms". Biochemistry 46(37): 10517-27.
Enantioselective synthesis of (2R, 3S)- and (2S, 3R)-4,4,4-trifluoro-N-Fmoc-O-tert-butyl-threonine and their racemization-free incorporation into oligopeptides via solid-phase synthesis.
Xiao N, Jiang ZX, Yu YB. 2007. Enantioselective synthesis of (2R, 3S)- and (2S, 3R)-4,4,4-trifluoro-N-Fmoc-O-tert-butyl-threonine and their racemization-free incorporation into oligopeptides via solid-phase synthesis. Biopolymers 88(6): 781-96.
Magnetic field induced residual dipolar couplings of imino groups in nucleic acids from measurements at a single magnetic field.
Ying J, Grishaev A, Latham MP, Pardi A, Bax A. 2007. Magnetic field induced residual dipolar couplings of imino groups in nucleic acids from measurements at a single magnetic field. Journal of biomolecular NMR 39(2): 91-6.
A sequence-based model accounts largely for the relationship of intron positions to protein structural features.
De Kee DW, Gopalan V, Stoltzfus A. 2007. A sequence-based model accounts largely for the relationship of intron positions to protein structural features. Molecular biology and evolution 24(10): 2158-68.
Protein assembly onto patterned microfabricated devices through enzymatic activation of fusion pro-tag.
Lewandowski AT, Yi H, Luo X, Payne GF, Ghodssi R, Rubloff GW, Bentley WE. 2008. Protein assembly onto patterned microfabricated devices through enzymatic activation of fusion pro-tag. Biotechnology and bioengineering 99(3): 499-507.
Comparative global transcription analysis of sodium hypochlorite, peracetic acid, and hydrogen peroxide on Pseudomonas aeruginosa.
Small DA, Chang W, Toghrol F, Bentley WE. 2007. Comparative global transcription analysis of sodium hypochlorite, peracetic acid, and hydrogen peroxide on Pseudomonas aeruginosa. Applied microbiology and biotechnology 76(5): 1093-105.
The design and characterization of two proteins with 88% sequence identity but different structure and function.
Alexander PA, He Y, Chen Y, Orban J, Bryan PN. 2007. The design and characterization of two proteins with 88% sequence identity but different structure and function. Proceedings of the National Academy of Sciences of the United States of America 104(29): 11963-8.
Limits on variations in protein backbone dynamics from precise measurements of scalar couplings.
Vögeli B, Ying J, Grishaev A, Bax A. 2007. Limits on variations in protein backbone dynamics from precise measurements of scalar couplings. Journal of the American Chemical Society 129(30): 9377-85.
A search for inhibitors of S100B, a member of the S100 family of calcium-binding proteins.
Markowitz J, MacKerell AD, Weber DJ. 2007. A search for inhibitors of S100B, a member of the S100 family of calcium-binding proteins. Mini reviews in medicinal chemistry 7(6): 609-16.
Transglutaminase crosslinked gelatin as a tissue engineering scaffold.
Yung CW, Wu LQ, Tullman JA, Payne GF, Bentley WE, Barbari TA. 2007. Transglutaminase crosslinked gelatin as a tissue engineering scaffold. Journal of biomedical materials research. Part A 83(4): 1039-1046. DOI: 10.1002/jbm.a.31431
Intraspecific genetic variations, fitness cost and benefit of RPW8, a disease resistance locus in Arabidopsis thaliana.
Orgil U, Araki H, Tangchaiburana S, Berkey R, Xiao S. 2007. Intraspecific genetic variations, fitness cost and benefit of RPW8, a disease resistance locus in Arabidopsis thaliana. Genetics 176(4): 2317-33.
Bio::NEXUS: a Perl API for the NEXUS format for comparative biological data.
Hladish T, Gopalan V, Liang C, Qiu W, Yang P, Stoltzfus A. 2007. Bio::NEXUS: a Perl API for the NEXUS format for comparative biological data. BMC bioinformatics 8: 191.
An artificially evolved albumin binding module facilitates chemical shift epitope mapping of GA domain interactions with phylogenetically diverse albumins.
He Y, Chen Y, Rozak DA, Bryan PN, Orban J. 2007. An artificially evolved albumin binding module facilitates chemical shift epitope mapping of GA domain interactions with phylogenetically diverse albumins. Protein science : a publication of the Protein Society 16(7): 1490-4.
Synaptic arrangement of the neuroligin/beta-neurexin complex revealed by X-ray and neutron scattering.
Comoletti D, Grishaev A, Whitten AE, Tsigelny I, Taylor P, Trewhella J. 2007. Synaptic arrangement of the neuroligin/beta-neurexin complex revealed by X-ray and neutron scattering. Structure (London, England : 1993) 15(6): 693-705.
A novel loop domain in superantigens extends their T cell receptor recognition site.
Günther S, Varma AK, Moza B, Kasper KJ, Wyatt AW, Zhu P, Rahman AK, Li Y, Mariuzza RA, McCormick JK, et al. 2007. A novel loop domain in superantigens extends their T cell receptor recognition site. Journal of molecular biology 371(1): 210-21.