IBBR Publications

Croitoru A, Park S-J, Kumar A, Lee J, Im W, Mackerell AD, Aleksandrov A. Additive CHARMM36 Force Field for Nonstandard Amino Acids. J Chem Theory Comput. 2021 ;17(6):3554-3570.

Amcheslavsky A, Wallace AL, Ejemel M, Li Q, McMahon CT, Stoppato M, Giuntini S, Schiller ZA, Pondish JR, Toomey JR, et al. Anti-CfaE nanobodies provide broad cross-protection against major pathogenic enterotoxigenic Escherichia coli strains, with implications for vaccine design. Sci Rep. 2021 ;11(1):2751.

Linden SB, Alreja AB, Nelson DC. Application of bacteriophage-derived endolysins to combat streptococcal disease: current State and perspectives. Curr Opin Biotechnol. 2021 ;68:213-220.

Kim E, Zhao Z, Rzasa JRobertson, Glassman M, Bentley WE, Chen S, Kelly DL, Payne GF. Association of acute psychosocial stress with oxidative stress: Evidence from serum analysis. Redox Biol. 2021 ;47:102138.

Liu J, Liu M, Tan L, Huai B, Ma X, Pan Q, Zheng P, Wen Y, Zhang Q, Zhao Q, et al. AtSTP8, an endoplasmic reticulum-localized monosaccharide transporter from Arabidopsis, is recruited to the extrahaustorial membrane during powdery mildew infection. New Phytol. 2021 .

Pirolli NH, Bentley WE, Jay SM. Bacterial Extracellular Vesicles and the Gut-Microbiota Brain Axis: Emerging Roles in Communication and Potential as Therapeutics. Adv Biol (Weinh). 2021 :e2000540.

Terrell JL, Tschirhart T, Jahnke JP, Stephens K, Liu Y, Dong H, Hurley MM, Pozo M, Mckay R, Tsao CYu, et al. Bioelectronic control of a microbial community using surface-assembled electrogenetic cells to route signals. Nat Nanotechnol. 2021 .

Kryshtafovych A, Moult J, Albrecht R, Chang GA, Chao K, Fraser A, Greenfield J, Hartmann MD, Herzberg O, Josts I, et al. Computational models in the service of X-ray and cryo-EM structure determination. Proteins. 2021 .

Comert F, Heinrich F, Chowdhury A, Schoeneck M, Darling C, Anderson KW, M Libardo DJ, Angeles-Boza AM, Silin, ii V, Cotten ML, et al. Copper-binding anticancer peptides from the piscidin family: an expanded mechanism that encompasses physical and chemical bilayer disruption. Sci Rep. 2021 ;11(1):12620.

Telu KH, Marupaka R, Andriamaharavo NR, Simón-Manso Y, Liang Y, Mirokhin YA, Bukhari TH, Preston RJ, Kashi L, Kelman Z, et al. Creation and Filtering of a Recurrent Spectral Library of CHO Cell Metabolites and Media Components. Biotechnol Bioeng. 2021 .

Kryshtafovych A, Schwede T, Topf M, Fidelis K, Moult J. Critical Assessment of Methods of Protein Structure Prediction (CASP) - Round XIV. Proteins. 2021 .

Shahid S, Gao M, D Gallagher T, Pozharski E, Brinson RG, Keck Z-Y, Foung SKH, Fuerst TR, Mariuzza RA. Crystal Structure of a Bivalent Antibody Fab Fragment. J Mol Biol. 2021 ;433(2):166714.

Anderson KW, Scott KBauer, Karageorgos I, Gallagher ES, Tayi VS, Butler M, Hudgens JW. Dataset from HDX-MS Studies of IgG1 Glycoforms and Their Interactions with the FcγRIa (CD64) Receptor. Journal of Research of the National Institute of Standards and Technology. 2021 ;126.

Guest JD, Wang R, Elkholy KH, Chagas A, Chao KL, Cleveland TE, Kim YChang, Keck Z-Y, Marin A, Yunus AS, et al. Design of a native-like secreted form of the hepatitis C virus E1E2 heterodimer. Proc Natl Acad Sci U S A. 2021 ;118(3).

Parvaiz N, Ahmad F, Yu W, Mackerell AD, Azam SSikander. Discovery of beta-lactamase CMY-10 inhibitors for combination therapy against multi-drug resistant Enterobacteriaceae. PLoS One. 2021 ;16(1):e0244967.

Muro S. Drug Delivery Systems: A Few Examples of Applications, Drug Cargoes, and Administration Routes. Curr Pharm Des. 2021 ;27(17):1975-1976.

Xiao S, Ge X, Han Q-L, Zhang Y. Dynamic Event-Triggered Platooning Control of Automated Vehicles Under Random Communication Topologies and Various Spacing Policies. IEEE Trans Cybern. 2021 ;PP.

Wu Y, Diaz D, Yin J, Bloodgood D, Sexton W, Wei C-I, Xiao S. An Easy and Flexible Inoculation Method for Accurately Assessing Powdery Mildew-Infection Phenotypes of Arabidopsis and Other Plants. J Vis Exp. 2021 ;(169).

Rosenberg JN, Bentley WE, Betenbaugh MJ. Editorial overview: Bioanalytical tools, techniques, and trailblazers offer insight to drive bioprocess development. Curr Opin Biotechnol. 2021 .

Stephens K, Zakaria FRahma, VanArsdale E, Payne GF, Bentley WE. Electronic signals are electrogenetically relayed to control cell growth and co-culture composition. Metab Eng Commun. 2021 ;13:e00176.

Alfaro JAntonio, Bohländer P, Dai M, Filius M, Howard CJ, van Kooten XF, Ohayon S, Pomorski A, Schmid S, Aksimentiev A, et al. The emerging landscape of single-molecule protein sequencing technologies. Nat Methods. 2021 ;18(6):604-617.

Chen Y, Toth EA, Ruan B, Choi EJung, Simmerman R, Chen Y, He Y, Wang R, Godoy-Ruiz R, King H, et al. Engineering subtilisin proteases that specifically degrade active RAS. Commun Biol. 2021 ;4(1):299.

Guest JD, Vreven T, Zhou J, Moal I, Jeliazkov JR, Gray JJ, Weng Z, Pierce BG. An expanded benchmark for antibody-antigen docking and affinity prediction reveals insights into antibody recognition determinants. Structure. 2021 .

Feng J, Li YLian, Wang DJuan, Ma YY, Cai XL, Xiao S, Wen Y. First Report of strain YL19 causing crown infection pockets in strawberry in Liaoning Province, China. Plant Dis. 2021 .

Lind C, Pandey P, Pastor RW, Mackerell AD. Functional Group Distributions, Partition Coefficients, and Resistance Factors in Lipid Bilayers Using Site Identification by Ligand Competitive Saturation. J Chem Theory Comput. 2021 ;17(5):3188-3202.