IBBR Publications

Telu KH, Marupaka R, Andriamaharavo NR, Simón-Manso Y, Liang Y, Mirokhin YA, Bukhari TH, Preston RJ, Kashi L, Kelman Z, et al. Creation and Filtering of a Recurrent Spectral Library of CHO Cell Metabolites and Media Components. Biotechnol Bioeng. 2021 .

Shahid S, Gao M, D Gallagher T, Pozharski E, Brinson RG, Keck Z-Y, Foung SKH, Fuerst TR, Mariuzza RA. Crystal Structure of a Bivalent Antibody Fab Fragment. J Mol Biol. 2021 ;433(2):166714.

Guest JD, Wang R, Elkholy KH, Chagas A, Chao KL, Cleveland TE, Kim YChang, Keck Z-Y, Marin A, Yunus AS, et al. Design of a native-like secreted form of the hepatitis C virus E1E2 heterodimer. Proc Natl Acad Sci U S A. 2021 ;118(3).

Solano-Gonzalez E, Coburn KM, Yu W, Wilson GM, Nurmemmedov E, Kesari S, Chang ET, Mackerell AD, Weber DJ, Carrier F. Small molecules inhibitors of the heterogeneous ribonuclear protein A18 (hnRNP A18): a regulator of protein translation and an immune checkpoint. Nucleic Acids Res. 2021 .

Krueger S, Curtis JE, Scott DR, Grishaev A, Glenn G, Smith G, Ellingsworth L, Borisov O, Maynard EL. Structural Characterization and Modeling of a Respiratory Syncytial Virus Fusion Glycoprotein Nanoparticle Vaccine in Solution. Mol Pharm. 2021 ;18(1):359-376.

Mousaei M, Kudaibergenova M, Mackerell AD, Noskov S. Assessing hERG1 Blockade from Bayesian Machine-Learning-Optimized Site Identification by Ligand Competitive Saturation Simulations. J Chem Inf Model. 2020 ;60(12):6489-6501.

Arbogast LW, Delaglio F, Brinson RG, Marino JP. Assessment of the Higher-Order Structure of Formulated Monoclonal Antibody Therapeutics by 2D Methyl Correlated NMR and Principal Component Analysis. Curr Protoc Protein Sci. 2020 ;100(1):e105.

Arbogast LW, Delaglio F, Brinson RG, Marino JP. Assessment of the Higher‐Order Structure of Formulated Monoclonal Antibody Therapeutics by 2D Methyl Correlated NMR and Principal Component Analysis. Current Protocols in Protein Science [Internet]. 2020 ;100(1). Available from: https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpps.105

Josey BP, Heinrich F, Silin VI, Lösche M. Association of Model Neurotransmitters with Lipid Bilayer Membranes. Biophys J. 2020 .

Weissman JL, Stoltzfus A, Westra ER, Johnson PLF. Avoidance of Self during CRISPR Immunization. Trends Microbiol. 2020 ;28(7):543-553.

Kognole AA, Aytenfisu AH, Mackerell AD. Balanced polarizable Drude force field parameters for molecular anions: phosphates, sulfates, sulfamates, and oxides. J Mol Model. 2020 ;26(6):152.

Brinson RG, Arbogast LW, Marino JP, Delaglio F. Best Practices in Utilization of 2D-NMR Spectral Data as the Input for Chemometric Analysis in Biopharmaceutical Applications. J Chem Inf Model. 2020 .

Daniels J, Doukas PG, Escala MEMartinez, Ringbloom KG, Shih DJH, Yang J, Tegtmeyer K, Park J, Thomas JJ, Selli ME, et al. Cellular origins and genetic landscape of cutaneous gamma delta T cell lymphomas. Nat Commun. 2020 ;11(1):1806.

Elst NVander, Linden SB, Lavigne R, Meyer E, Briers Y, Nelson DC. Characterization of the Bacteriophage-Derived Endolysins PlySs2 and PlySs9 with In Vitro Lytic Activity against Bovine Mastitis . Antibiotics (Basel). 2020 ;9(9).

Lawrence C, Grishaev A. Chemical shifts-based similarity restraints improve accuracy of RNA structures determined via NMR. RNA. 2020 .

Fu H, Zhao M, Xu J, Tan L, Han J, Li D, Wang M, Xiao S, Ma X, Deng Z. Citron C-05 inhibits both the penetration and colonization of subsp. to achieve resistance to citrus canker disease. Hortic Res. 2020 ;7:58.

VanArsdale E, Hörnström D, Sjöberg G, Järbur I, Pitzer J, Payne GF, van Maris AJA, Bentley WE. A Coculture Based Tyrosine-Tyrosinase Electrochemical Gene Circuit for Connecting Cellular Communication with Electronic Networks. ACS Synth Biol. 2020 .

Elliott KW, Ghasriani H, Wikström M, Giddens JP, Aubin Y, Delaglio F, Marino JP, Arbogast LW. Comparative Analysis of 1D PROFILE and 2D 1H,13C Methyl NMR Methods for Characterization of the Higher Order Structure of IgG1 Monoclonal Antibodies. Analytical Chemstry [Internet]. 2020 ;92(9). Available from: https://pubs.acs.org/doi/abs/10.1021/acs.analchem.9b05385

Elliott KW, Ghasriani H, Wikström M, Giddens JP, Aubin Y, Delaglio F, Marino JP, Arbogast LW. Comparative Analysis of One-Dimensional Protein Fingerprint by Line Shape Enhancement and Two-Dimensional H,C Methyl NMR Methods for Characterization of the Higher Order Structure of IgG1 Monoclonal Antibodies. Anal Chem. 2020 .

Jo S, Xu A, Curtis JE, Somani S, Mackerell AD. Computational Characterization of Antibody-Excipient Interactions for Rational Excipient Selection Using the Site Identification by Ligand Competitive Saturation-Biologics Approach. Mol Pharm. 2020 .

Tyukhtenko S, Ma X, Rajarshi G, Karageorgos I, Anderson KW, Hudgens JW, Guo JJ, Nasr ML, Zvonok N, Vemuri K, et al. Conformational gating, dynamics and allostery in human monoacylglycerol lipase. Sci Rep. 2020 ;10(1):18531.

Gowthaman R, Guest JD, Yin R, Adolf-Bryfogle J, Schief WR, Pierce BG. CoV3D: a database of high resolution coronavirus protein structures. Nucleic Acids Res. 2020 .

Gowthaman R, Guest JD, Yin R, Adolf-Bryfogle J, Schief WR, Pierce BG. CoV3D: A database of high resolution coronavirus protein structures. bioRxiv. 2020 .

Wan D-Y, Guo Y, Cheng Y, Hu Y, Xiao S, Wang Y, Wen Y-Q. CRISPR/Cas9-mediated mutagenesis of results in enhanced resistance to powdery mildew in grapevine (). Hortic Res. 2020 ;7:116.

Chen C-L, S Hasan S, Klose T, Sun Y, Buda G, Sun C, Klimstra WB, Rossmann MG. Cryo-EM structure of eastern equine encephalitis virus in complex with heparan sulfate analogues. Proc Natl Acad Sci U S A. 2020 ;117(16):8890-8899.