IBBR Publications

Urbanowicz RA, Wang R, Schiel JE, Keck Z-Y, Kerzic MC, Lau P, Rangarajan S, Garagusi KJ, Tan L, Guest JD, et al. Antigenicity and Immunogenicity of Differentially Glycosylated HCV E2 Envelope Proteins Expressed in Mammalian and Insect Cells. J Virol. 2019 .

Lei L, Tran K, Wang Y, Steinhardt JJ, Xiao Y, Chiang C-I, Wyatt RT, Li Y. Antigen-Specific Single B Cell Sorting and Monoclonal Antibody Cloning in Guinea Pigs. Front Microbiol. 2019 ;10:672.

Kasak L, Bakolitsa C, Hu Z, Yu C, Rine J, Dimster-Denk DF, Pandey G, De Baets G, Bromberg Y, Cao C, et al. Assessing Computational Predictions of the Phenotypic Effect of Cystathionine-beta-Synthase Variants. Hum Mutat. 2019 .

Nazario-Toole AE, Wu LP. Assessing the Cellular Immune Response of the Fruit Fly, Drosophila melanogaster, Using an In Vivo Phagocytosis Assay. J Vis Exp. 2019 ;(146).

Pejaver V, Babbi G, Casadio R, Folkman L, Katsonis P, Kundu K, Lichtarge O, Martelli PLuigi, Miller M, Moult J, et al. Assessment of methods for predicting the effects of PTEN and TPMT protein variants. Hum Mutat. 2019 .

Carraro M, Monzon AMiguel, Chiricosta L, Reggiani F, Aspromonte MCristina, Bellini M, Pagel K, Jiang Y, Radivojac P, Kundu K, et al. Assessment of patient clinical descriptions and pathogenic variants from gene panel sequences in the CAGI-5 intellectual disability challenge. Hum Mutat. 2019 .

Clark WT, Kasak L, Bakolitsa C, Hu Z, Andreoletti G, Babbi G, Bromberg Y, Casadio R, Dunbrack R, Folkman L, et al. Assessment of predicted enzymatic activity of alpha-N-acetylglucosaminidase (NAGLU) variants of unknown significance for CAGI 2016. Hum Mutat. 2019 .

Ueda H, Stephens K, Trivisa K, Bentley WE. Bacteria Floc, but Do They Flock? Insights from Population Interaction Models of Quorum Sensing. MBio. 2019 ;10(3).

Keck Z-Y, Pierce BG, Lau P, Lu J, Wang Y, Underwood A, Bull RA, Prentoe J, Velázquez-Moctezuma R, Walker MR, et al. Broadly neutralizing antibodies from an individual that naturally cleared multiple hepatitis C virus infections uncover molecular determinants for E2 targeting and vaccine design. PLoS Pathog. 2019 ;15(5):e1007772.

Kasak L, Hunter JM, Udani R, Bakolitsa C, Hu Z, Adhikari AN, Babbi G, Casadio R, Gough J, Guerrero RF, et al. CAGI SickKids challenges: Assessment of phenotype and variant predictions derived from clinical and genomic data of children with undiagnosed diseases. Hum Mutat. 2019 .

Yang H, Gong Y, Zhang H, Etobayeva I, Miernikiewicz P, Luo D, Li X, Zhang X, Dabrowska K, Nelson DC, et al. ClyJ, a novel pneumococcal chimeric lysin with a CHAP catalytic domain. Antimicrob Agents Chemother. 2019 .

Marcos-Contreras OA, Brenner JS, Kiseleva RY, Zuluaga-Ramirez V, Greineder CF, Villa CH, Hood ED, Myerson JW, Muro S, Persidsky Y, et al. Combining vascular targeting and the local first pass provides 100-fold higher uptake of ICAM-1-targeted vs untargeted nanocarriers in the inflamed brain. J Control Release. 2019 ;301:54-61.

Shang X, Nelson DC. Contributions of Net Charge on the PlyC Endolysin CHAP Domain. Antibiotics (Basel). 2019 ;8(2).

Villa F, Mackerell AD, Roux B, Simonson T. Correction to "Classical Drude Polarizable Force Field Model for Methyl Phosphate and Its Interactions with Mg". J Phys Chem A. 2019 .

Li J, Maniar D, Qu X, Liu H, Tsao C-Y, Kim E, Bentley WE, Liu C, Payne GF. Coupling Self-Assembly Mechanisms to Fabricate Molecularly and Electrically Responsive Films. Biomacromolecules. 2019 .

Pandey P, Aytenfisu AH, Mackerell AD, Mallajosyula SS. Drude Polarizable Force Field Parametrization of Carboxylate and N-acetyl Amine Carbohydrate Derivatives. J Chem Theory Comput. 2019 .

Gardner AF, Kelman Z. Editorial: The DNA Replication Machinery as Therapeutic Targets. Front Mol Biosci. 2019 ;6:35.

Li J, Wu S, Kim E, Yan K, Liu H, Liu C, Dong H, Qu X, Shi X, Shen J, et al. Electrobiofabrication: electrically-based fabrication with biologically-derived materials. Biofabrication. 2019 .

Brinson RG, Marino JP, Delaglio F, Arbogast LW, Evans RM, Kearsley A, Gingras G, Ghasriani H, Aubin Y, Pierens GK, et al. Enabling adoption of 2D-NMR for the higher order structure assessment of monoclonal antibody therapeutics. MAbs. 2019 ;11(1):94-105.

Tullman J, Callahan N, Ellington B, Kelman Z, Marino JP. Engineering ClpS for selective and enhanced N-terminal amino acid binding. Appl Microbiol Biotechnol. 2019 .

Stephens K, Zargar A, Emamian M, Abutaleb N, Choi E, Quan DN, Payne G, Bentley WE. Engineering Escherichia coli for enhanced sensitivity to the autoinducer-2 quorum sensing signal. Biotechnol Prog. 2019 :e2881.

Lin F-Y, Mackerell AD. Force Fields for Small Molecules. Methods Mol Biol. 2019 ;2022:21-54.

Lei L, Yang YR, Tran K, Wang Y, Chiang C-I, Ozorowski G, Xiao Y, Ward AB, Wyatt RT, Li Y. The HIV-1 Envelope Glycoprotein C3/V4 Region Defines a Prevalent Neutralization Epitope following Immunization. Cell Rep. 2019 ;27(2):586-598.e6.

Karade SS, Mariuzza RA. How Natural Killer Cell Receptors Stick to Cell-Cell Adhesion Proteins. Structure. 2019 ;27(2):209-210.

Hudgens JW, Gallagher ES, Karageorgos I, Anderson KW, Huang RY-C, Chen G, Bou-Assaf GM, Espada A, Chalmers MJ, Harguindey E, et al. Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS) Centroid Data Measured between 3.6 °C and 25.4 °C for the Fab Fragment of NISTmAb. Journal of Research of the National Institute of Standards and Technology [Internet]. 2019 ;124. Available from: https://nvlpubs.nist.gov/nistpubs/jres/124/jres.124.009.pdf