Critical assessment of methods of protein structure prediction (CASP) - round X.

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TitleCritical assessment of methods of protein structure prediction (CASP) - round X.
Publication TypeJournal Article
Year of Publication2013
AuthorsMoult, J, Fidelis, K, Kryshtafovych, A, Schwede, T, Tramontano, A
JournalProteins
Date Published2013 Oct 29
ISSN1097-0134
Abstract<p>This article is an introduction to the special issue of the journal PROTEINS, dedicated to the tenth Critical Assessment of Structure Prediction (CASP) experiment to assess the state of the art in protein structure modeling. The article describes the conduct of the experiment, the categories of prediction included, and outlines the evaluation and assessment procedures. The 10 CASP experiments span almost 20 years of progress in the field of protein structure modeling, and there have been enormous advances in methods and model accuracy in that period. Notable in this round is the first sustained improvement of models with refinement methods, using molecular dynamics. For the first time, we tested the ability of modeling methods to make use of sparse experimental three-dimensional contact information, such as may be obtained from new experimental techniques, with encouraging results. On the other hand, new contact prediction methods, though holding considerable promise, have yet to make an impact in CASP testing. The nature of CASP targets has been changing in recent CASPs, reflecting shifts in experimental structural biology, with more irregular structures, more multi-domain and multi-subunit structures, and less standard versions of known folds. When allowance is made for these factors, we continue to see steady progress in the overall accuracy of models, particularly resulting from improvement of non-template regions. Proteins 2013. © 2013 Wiley Periodicals, Inc.</p>
DOI10.1002/prot.24452
Alternate JournalProteins
PubMed ID24344053