Nexplorer: phylogeny-based exploration of sequence family data.

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TitleNexplorer: phylogeny-based exploration of sequence family data.
Publication TypeJournal Article
Year of Publication2006
AuthorsGopalan, V, Qiu, W-G, Chen, MZ, Stoltzfus, A
JournalBioinformatics
Volume22
Issue1
Pagination120-1
Date Published2006 Jan 1
ISSN1367-4803
KeywordsAnimals, Computational Biology, Computer Graphics, Databases, Protein, Humans, Internet, Mitochondrial Proton-Translocating ATPases, Phylogeny, Programming Languages, Sequence Alignment, Sequence Analysis, DNA, Sequence Analysis, Protein, Software, User-Computer Interface
Abstract

SUMMARY: Nexplorer is a web-based program for interactive browsing and manipulation of character data in NEXUS format, well suited for use with alignments and trees representing families of homologous genes or proteins. Users may upload a sequence family dataset, or choose from one of several thousand already available. Nexplorer provides a flexible means to develop customized views that combine a tree and a data matrix or alignment, to create subsets of data, and to output data files or publication-quality graphics.

AVAILABILITY: Web access is from http://www.molevol.org/nexplorer

DOI10.1093/bioinformatics/bti747
Alternate JournalBioinformatics
PubMed ID16267087
PubMed Central IDPMC1615790
Grant ListGM 060654 / GM / NIGMS NIH HHS / United States
R01 LM 007218 / LM / NLM NIH HHS / United States