Dozens of test tubes in a holder

Publications

Publications

Fusion pore formation and expansion induced by Ca2+ and synaptotagmin 1.
Lai Y, Diao J, Liu Y, Ishitsuka Y, Su Z, Schulten K, Ha T, Shin YK. 2013. Fusion pore formation and expansion induced by Ca2+ and synaptotagmin 1. Proceedings of the National Academy of Sciences of the United States of America 110(4): 1333-8. DOI: 10.1073/pnas.1218818110
Structural Characterization of λ-Repressor Folding from All-Atom Molecular Dynamics Simulations.
Liu Y, Strümpfer J, Freddolino PL, Gruebele M, Schulten K. 2012. Structural Characterization of λ-Repressor Folding from All-Atom Molecular Dynamics Simulations. The journal of physical chemistry letters 3(9): 1117-1123.
Extension of a three-helix bundle domain of myosin VI and key role of calmodulins.
Liu Y, Hsin J, Kim H, Selvin PR, Schulten K. 2011. Extension of a three-helix bundle domain of myosin VI and key role of calmodulins. Biophysical journal 100(12): 2964-73. DOI: 10.1016/j.bpj.2011.05.010
Challenges in protein folding simulations: Timescale, representation, and analysis.
Freddolino PL, Harrison CB, Liu Y, Schulten K. 2010. Challenges in protein folding simulations: Timescale, representation, and analysis. Nature physics 6(10): 751-758.
Formation of salt bridges mediates internal dimerization of myosin VI medial tail domain.
Kim H, Hsin J, Liu Y, Selvin PR, Schulten K. 2010. Formation of salt bridges mediates internal dimerization of myosin VI medial tail domain. Structure (London, England : 1993) 18(11): 1443-9. DOI: 10.1016/j.str.2010.09.011
Flow-induced beta-hairpin folding of the glycoprotein Ibalpha beta-switch.
Zou X, Liu Y, Chen Z, Cárdenas-Jirón GI, Schulten K. 2010. Flow-induced beta-hairpin folding of the glycoprotein Ibalpha beta-switch. Biophysical journal 99(4): 1182-91. DOI: 10.1016/j.bpj.2010.05.035
Stabilization of native and non-native structures by salt bridges in a lattice model of the GCN4 leucine dimer.
Liu Y, Chapagain PP, Gerstman BS. 2010. Stabilization of native and non-native structures by salt bridges in a lattice model of the GCN4 leucine dimer. The journal of physical chemistry. B 114(2): 796-803. DOI: 10.1021/jp909872a
The trigger sequence in the GCN4 leucine zipper: alpha-helical propensity and multistate dynamics of folding and dimerization.
Chapagain PP, Liu Y, Gerstman BS. 2008. The trigger sequence in the GCN4 leucine zipper: alpha-helical propensity and multistate dynamics of folding and dimerization. The Journal of chemical physics 129(17): 175103. DOI: 10.1063/1.3006421
Lattice model simulation of interchain protein interactions and the folding dynamics and dimerization of the GCN4 Leucine zipper.
Liu Y, Chapagain PP, Parra JL, Gerstman BS. 2008. Lattice model simulation of interchain protein interactions and the folding dynamics and dimerization of the GCN4 Leucine zipper. The Journal of chemical physics 128(4): 045106. DOI: 10.1063/1.2831513
Sampling of states for estimating the folding funnel entropy and energy landscape of a model alpha-helical hairpin peptide.
Chapagain PP, Parra JL, Gerstman BS, Liu Y. 2007. Sampling of states for estimating the folding funnel entropy and energy landscape of a model alpha-helical hairpin peptide. The Journal of chemical physics 127(7): 075103.

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