Publications
Publications
Freddolino PL, Harrison CB, Liu Y, Schulten K. 2010. Challenges in protein folding simulations: Timescale, representation, and analysis. Nature physics 6(10): 751-758.
Kim H, Hsin J, Liu Y, Selvin PR, Schulten K. 2010. Formation of salt bridges mediates internal dimerization of myosin VI medial tail domain. Structure (London, England : 1993) 18(11): 1443-9. DOI: 10.1016/j.str.2010.09.011
Zou X, Liu Y, Chen Z, Cárdenas-Jirón GI, Schulten K. 2010. Flow-induced beta-hairpin folding of the glycoprotein Ibalpha beta-switch. Biophysical journal 99(4): 1182-91. DOI: 10.1016/j.bpj.2010.05.035
Liu Y, Chapagain PP, Gerstman BS. 2010. Stabilization of native and non-native structures by salt bridges in a lattice model of the GCN4 leucine dimer. The journal of physical chemistry. B 114(2): 796-803. DOI: 10.1021/jp909872a
Chapagain PP, Liu Y, Gerstman BS. 2008. The trigger sequence in the GCN4 leucine zipper: alpha-helical propensity and multistate dynamics of folding and dimerization. The Journal of chemical physics 129(17): 175103. DOI: 10.1063/1.3006421
Liu Y, Chapagain PP, Parra JL, Gerstman BS. 2008. Lattice model simulation of interchain protein interactions and the folding dynamics and dimerization of the GCN4 Leucine zipper. The Journal of chemical physics 128(4): 045106. DOI: 10.1063/1.2831513
Chapagain PP, Parra JL, Gerstman BS, Liu Y. 2007. Sampling of states for estimating the folding funnel entropy and energy landscape of a model alpha-helical hairpin peptide. The Journal of chemical physics 127(7): 075103.