Publications
Publications
Chen Z, Greenan GA, Shiozaki M, Liu Y, Skinner WM, Zhao X, Zhao S, Yan R, Yu Z, Lishko PV, et al. 2023. In situ cryo-electron tomography reveals the asymmetric architecture of mammalian sperm axonemes. Nature structural & molecular biology 30(3): 360-369. DOI: 10.1038/s41594-022-00861-0
Gupta M, Azumaya CM, Moritz M, Pourmal S, Diallo A, Merz GE, Jang G, Bouhaddou M, Fossati A, Brilot AF, et al. 2021. CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes. bioRxiv : the preprint server for biology : . DOI: 10.1101/2021.05.10.443524
Schoof M, Faust B, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesbølle CB, Puchades C, Azumaya CM, et al. 2020. An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike. Science (New York, N.Y.) 370(6523): 1473-1479. DOI: 10.1126/science.abe3255
Gordon DE, Hiatt J, Bouhaddou M, Rezelj VV, Ulferts S, Braberg H, Jureka AS, Obernier K, Guo JZ, Batra J, et al. 2020. Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. Science (New York, N.Y.) 370(6521): . DOI: 10.1126/science.abe9403
Wang F, Liu Y, Yu Z, Li S, Feng S, Cheng Y, Agard DA. 2020. General and robust covalently linked graphene oxide affinity grids for high-resolution cryo-EM. Proceedings of the National Academy of Sciences of the United States of America 117(39): 24269-24273. DOI: 10.1073/pnas.2009707117
Joshi A, Dai L, Liu Y, Lee J, Ghahhari NM, Segala G, Beebe K, Jenkins LM, Lyons GC, Bernasconi L, et al. 2020. The mitochondrial HSP90 paralog TRAP1 forms an OXPHOS-regulated tetramer and is involved in mitochondrial metabolic homeostasis. BMC biology 18(1): 10. DOI: 10.1186/s12915-020-0740-7
Zhang SQ, Huang H, Yang J, Kratochvil HT, Lolicato M, Liu Y, Shu X, Liu L, DeGrado WF. 2018. Designed peptides that assemble into cross-α amyloid-like structures. Nature chemical biology 14(9): 870-875. DOI: 10.1038/s41589-018-0105-5
Elnatan D, Betegon M, Liu Y, Ramelot T, Kennedy MA, Agard DA. 2017. Symmetry broken and rebroken during the ATP hydrolysis cycle of the mitochondrial Hsp90 TRAP1. eLife 6: . DOI: 10.7554/eLife.25235
Verba KA, Wang RY, Arakawa A, Liu Y, Shirouzu M, Yokoyama S, Agard DA. 2016. Atomic structure of Hsp90-Cdc37-Cdk4 reveals that Hsp90 traps and stabilizes an unfolded kinase. Science (New York, N.Y.) 352(6293): 1542-7. DOI: 10.1126/science.aaf5023
Wirth AJ, Liu Y, Prigozhin MB, Schulten K, Gruebele M. 2015. Comparing Fast Pressure Jump and Temperature Jump Protein Folding Experiments and Simulations. Journal of the American Chemical Society 137(22): 7152-7159. DOI: 10.1021/jacs.5b02474
Cai E, Ge P, Lee SH, Jeyifous O, Wang Y, Liu Y, Wilson KM, Lim SJ, Baird MA, Stone JE, et al. 2014. Stable small quantum dots for synaptic receptor tracking on live neurons. Angewandte Chemie (International ed. in English) 53(46): 12484-8. DOI: 10.1002/anie.201405735
Zhou Q, Li J, Yu H, Zhai Y, Gao Z, Liu Y, Pang X, Zhang L, Schulten K, Sun F, et al. 2014. Molecular insights into the membrane-associated phosphatidylinositol 4-kinase IIα. Nature communications 5: 3552. DOI: 10.1038/ncomms4552
Wang Y, Liu Y, Deberg HA, Nomura T, Hoffman MT, Rohde PR, Schulten K, Martinac B, Selvin PR. 2014. Single molecule FRET reveals pore size and opening mechanism of a mechano-sensitive ion channel. eLife 3: e01834. DOI: 10.7554/eLife.01834
Liu Y, Prigozhin MB, Schulten K, Gruebele M. 2014. Observation of complete pressure-jump protein refolding in molecular dynamics simulation and experiment. Journal of the American Chemical Society 136(11): 4265-72. DOI: 10.1021/ja412639u
Zhang K, Wang L, Liu Y, Chan KY, Pang X, Schulten K, Dong Z, Sun F. 2013. Flexible interwoven termini determine the thermal stability of thermosomes. Protein & cell 4(6): 432-44. DOI: 10.1007/s13238-013-3026-9
Prigozhin MB, Liu Y, Wirth AJ, Kapoor S, Winter R, Schulten K, Gruebele M. 2013. Misplaced helix slows down ultrafast pressure-jump protein folding. Proceedings of the National Academy of Sciences of the United States of America 110(20): 8087-92. DOI: 10.1073/pnas.1219163110
Wang X, Xu F, Liu J, Gao B, Liu Y, Zhai Y, Ma J, Zhang K, Baker TS, Schulten K, et al. 2013. Atomic model of rabbit hemorrhagic disease virus by cryo-electron microscopy and crystallography. PLoS pathogens 9(1): e1003132. DOI: 10.1371/journal.ppat.1003132
Lai Y, Diao J, Liu Y, Ishitsuka Y, Su Z, Schulten K, Ha T, Shin YK. 2013. Fusion pore formation and expansion induced by Ca2+ and synaptotagmin 1. Proceedings of the National Academy of Sciences of the United States of America 110(4): 1333-8. DOI: 10.1073/pnas.1218818110
Liu Y, Strümpfer J, Freddolino PL, Gruebele M, Schulten K. 2012. Structural Characterization of λ-Repressor Folding from All-Atom Molecular Dynamics Simulations. The journal of physical chemistry letters 3(9): 1117-1123.
Liu Y, Hsin J, Kim H, Selvin PR, Schulten K. 2011. Extension of a three-helix bundle domain of myosin VI and key role of calmodulins. Biophysical journal 100(12): 2964-73. DOI: 10.1016/j.bpj.2011.05.010